It would be better to use our standard trackDb table in
your databases. Do not try to load the trackDb table
from your source tree. If you have local generated data,
follow the instructions in the source tree file:
src/product/README.trackDb
about how to load your own private trackDb_local table
Re-sync your trackDb table from hgdownload to
restore your operation.
--Hiram
WANG Wuqi wrote:
> Hi Hiram,
>
> Now I already upgraded genome browser mirror system from version 218 to 226.
> But to encounter below 2 errors:
>
> Error 1 when display hg18:
> ======================================================================================
> Parent track encodeUvaDnaRepSuper of supertrack encodeUvaDnaRepTr50 doesn't
> exist
>
> Error 2 after upload data and add the entry of track, do 'make alpha DBS=<any
> DB>:
> =======================================================================================
> find . -type l -exec rm {} \;
> ./loadTracks -release=alpha trackDb hgFindSpec hg18
> hgTrackDb -release=alpha human hg18 trackDb ../../lib/trackDb.sql .
> Error: 'burgeRnaSeqGemMapperAlign' missing shortLabels or sortOrder setting
> is inconsistent.
> Sorted 82 containers
> parent fox2ClipSeqCompViewreads missing for subtrack fox2ClipSeq
> parent fox2ClipSeqCompViewdensity missing for subtrack
> fox2ClipSeqDensityForwardStrand
> parent fox2ClipSeqCompViewdensity missing for subtrack
> fox2ClipSeqDensityReverseStrand
> parent fox2ClipSeqCompViewclusters missing for subtrack fox2ClipClusters
> parent chainNetDanRer4Viewnet missing for subtrack netDanRer4
> parent chainNetXenTro1Viewchain missing for subtrack chainXenTro1
> parent chainNetDanRer3Viewchain missing for subtrack chainDanRer3
> parent chainNetDanRer2Viewchain missing for subtrack chainDanRer2
> parent chainNetRheMac1Viewchain missing for subtrack chainRheMac1
> ..., ...,
> parent chainNetOryLat2 : subtrack chainNetOryLat2Viewnet is missing subGroups
> parent chainNetVenter : subtrack chainNetVenterViewnet is missing subGroups
> parent chainNetPoodle : subtrack chainNetPoodleViewnet is missing subGroups
> parent fox2ClipSeqComp : subtrack fox2ClipSeqCompViewreads is missing
> subGroups
> Loaded 2256 track descriptions total
> trackDb (netDanRer4) setting "otherDb" not found for variable substitution of
> "$o_db" in netDanRer4
> make: *** [alpha] Error 255
> ===========================================================================================
>
> Please give advice.
>
>
> Thanks & Regards
>
> Wuqi
>
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