Could somebody answer me the following question? On Wed, Apr 21, 2010 at 2:48 PM, Peng Yu <[email protected]> wrote: > I'm wondering what "some sort of gap penalty" refers to. Also I query > 25bp sequence using the default, BLAT still gives the result. By > definition 25bp sequence should at most have a score of 25, which is > less than 30. Why the query still returns the the result? > > -minScore=N sets minimum score. This is the matches minus the > mismatches minus some sort of gap penalty. Default is 30 > > > -- > Regards, > Peng >
-- Regards, Peng _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
