Hello G.V., First, our apologies for the late reply.
The IDs you sent are found as identifiers in Aceview, but some with a slightly different ID format. Some are in other tracks in the format you use. For example: your list: 1700049G17Rik Aceview track: 1700049G17Rik.aSep07 (+ 3 other variants UCSC Genes track: 1700049G17Rik Normally, we would suggest using the Table browser, but with your IDs in this format, this may not be possible. If you want to try anyway or are able to complete the IDs: 1) in Table browser navigate to assembly & track 2) enter/paste/upload IDs in batch as identifiers 3) output data in batch FAQ: http://genome.ucsc.edu/goldenPath/help/hgTablesHelp.html#BatchQuery However for your case, a text flat file and your own tools to match up the IDs would probably be better if you have technical resources. Ftp the data from the Downloads server as .txt.gz files. The schema can be viewed in the Table browser or in the .sql files. Aceview files/tables: acembly, acemblyClass, acemblyPep FAQ: http://genome.ucsc.edu/FAQ/FAQdownloads.html#download1 Location: http://hgdownload.cse.ucsc.edu/goldenPath/mm9/database/ Thank you, Jennifer --------------------------------- Jennifer Jackson UCSC Genome Informatics Group http://genome.ucsc.edu/ On 4/12/10 6:51 AM, Gundala Viswanath wrote: > Dear Sir, > > I have a list of Aceview mouse genes (attached), > in which I want to extract the (a) summary and (b) closest homolog to > other species of each of these genes. > > Is there any existing flat file I can download for this purpose. > Because currently I can only cut and paste individual gene name > to the website, which can be quite troublesome. > > Thanks and truly hope to hear from you again. > > > -G.V. > > > > _______________________________________________ > Genome maillist - [email protected] > https://lists.soe.ucsc.edu/mailman/listinfo/genome _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
