Hello Kyle, Just to double check - the snp130seq table and your reference genome are both either hg18 or hg19?
The snp130 data is a bit complicated since the same snp130.fa file was used for hg18 & hg19 in the UCSC build (to save disc space). If everything seems to be the correct version, please share the rs number for the snp and the line from the snp130seq table that you are having problems with and we can provide feedback, thanks, Jennifer --------------------------------- Jennifer Jackson UCSC Genome Informatics Group http://genome.ucsc.edu/ On 5/3/10 3:09 PM, Kyle Tretina wrote: > To Whom It May Concern, > > I am attempting to create a mirror of your website, using only chr16 and the > snp130.fa to reproduce the alignments. When I enter in an rsnumber, the > graphic with the rsnumber in a black box appears as expected. However, when > I click on it to get to the next page that should have the alignment, I > instead get the following error message: > > Expected FASTA header, got this line: > tgcgg tgacgggcgc > at offset 1632856238 in file /gbdb/hg18/snp/snp130.fa > > I checked the size of the downloaded file snp130.fa and it appears to be the > correct size. I reloaded the snp130seq table in case that was the issue. Do > you have any idea as to what the problem might be? > > Thank you, > > Kyle Tretina > Wheaton College > _______________________________________________ > Genome maillist - [email protected] > https://lists.soe.ucsc.edu/mailman/listinfo/genome _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
