Dear Sir/Madam I am looking source files for tables in synteny that contain all conserved synteny regions (chr and nucleotide sequence locations) between the genomes of two organisms (human and mouse).
It seems that both axtNet/*.hg19.mm9.net.axt.gz and syntenicNet/*.hg19.mm9.synNet.axt.gz have required info, e.g. chr1.hg19.mm9.synNet.axt.txt 0 chr1 405402 405580 chr1 18566119 18566283 - 3972 YYI: seems right, but the format very similar to chr1.hg19.mm9.net.axt.txt 175 chr1 405402 405580 chr1 18566119 18566283 - 3972 but not all records are identical. can you explain why? and which file is best for my purpose? Andrew _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
