To whom it may concern, There was one area that was a little unclear in the documentation when creating a mirror for your site. I am only trying to re-produce the alignments for the track SNP(130). The data for gbdb, which I have re-downloaded twice and checked the file size for are:
/gbdb/hg18/snp/snp130.fa Also, under a link that Jennifer said would give us direction for building a chr16 only database ( http://genomewiki.ucsc.edu/index.php/Building_a_new_genome_database), I followed the instructions but was not sure what parts should be included because the page seems to be about a broader topic. What I did: -Download chr16.fa from ftp://hgdownload.cse.ucsc.edu/goldenPath/hg19/chromosomes/ -Convert chr16.fa to chr16.2bit using the BLAT-related program faToTwoBit (faToTwoBit chr16.fa chr16.2bit) -Move chr16.2bit to the gbdb/hg19 area and create a link to it called "hg19.2bit" I did not continue on with these instructions because it did not seem appropriate to what I was doing (for example, I already loaded the gold and gap tables from another step on the mirror procedures page). Am I missing something here? Kyle Tretina Wheaton College _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
