Hello, I am experiencing a problem with one of our custom bed file tracks that we have developed. When the track is displayed in the Genome Browser (March 2006 build/NCBI36), each bar appears to display correctly. However, when I click on some of the bars, the base pair position that is listed is incorrect for some of the bars. I have attached the custom .bed file for you to look at to see the same problem. For example, on chromosome 22 there are nine bars present on the chromosome. The base pair locations for bars #4 and 8 are incorrect, even though they are listed correctly in the .bed file and are displaying correctly in the Genome Browser. The problem seems to be resolved when I take away the thickStart and thickEND and just use a simplified .bed file, however I would like to continue to use the colored bars and cannot do so when it is in a simplified form. I have a few other custom files that also are showing this same effect, but I have attached this one as an example.
Thank you very much for your assistance, Elizabeth Wohler Kennedy Krieger Institute 707 N Broadway Baltimore, MD 21205 (443) 923-2785 Disclaimer: The materials in this e-mail are private and may contain Protected Health Information. Please note that e-mail is not necessarily confidential or secure. Your use of e-mail constitutes your acknowledgment of these confidentiality and security limitations. If you are not the intended recipient, be advised that any unauthorized use, disclosure, copying, distribution, or the taking of any action in reliance on the contents of this information is strictly prohibited. If you have received this e-mail in error, please immediately notify the sender via telephone or return e-mail.
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