Hi Päivi, I think that the function that you might be searching for is in the "Operate on genomic intervals" menu in galaxy, called "find closest feature". Upload your non-coding track and also the gene models of interest via the "send to galaxy" function from the table browser, then run the function.
For more details, the Galaxy helpdesk can better guide you, as Mary suggested. cheers Max On Fri, May 14, 2010 at 2:18 PM, Mary Goldman <[email protected]> wrote: > Hi Päivi, > > Thank you for looking at the genomewiki, which is maintained by the > genome browser staff as well as the community of users. If you have > questions about Galaxy, please contact their help desk at galaxy-user at > bx.psu.edu. They should be able to help you with whatever questions you > may have about their website. > > Please feel free to contact the mail list again if you require further > assistance. > > Best, > Mary > ------------------ > Mary Goldman > UCSC Bioinformatics Group > > On 5/14/10 12:33 AM, [email protected] wrote: > > Hi! > > > > Your wikisite > > http://genomewiki.ucsc.edu/index.php?title=Finding_nearby_genes says: > > > > NOTE: galaxy has a nearest-gene function now! --Max 20:37, 21 November > > 2009 (UTC) > > > > > > This is most probably a stupid question but where can I find this > > function? I tried to have a look with the galaxy workflow but did not > > succeed to find the function. I have several thousand snps (human > > build36/hg18), which I wish to connect to nearest gene. Detailed > > instructions how to do this are most appreciated ! > > > > Thanks in advance ! > > > > Päivi Rosenström > > > > > > _______________________________________________ > > Genome maillist - [email protected] > > https://lists.soe.ucsc.edu/mailman/listinfo/genome > > > _______________________________________________ > Genome maillist - [email protected] > https://lists.soe.ucsc.edu/mailman/listinfo/genome > _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
