Hello Konstantinos, I was able to view your attachment, and there are a few ways to access the data you need:
You can download the Multiple alignment file here: http://hgdownload.cse.ucsc.edu/goldenPath/mm9/multiz30way/ Or you can access the data from our tables in a few ways (multiz30way is the table you want): You can read about direct MySQL access to our databases here: http://genome.ucsc.edu/FAQ/FAQdownloads.html#download29 You might also want to try using our Table browser, which gives a more structured interface: http://genome.ucsc.edu/cgi-bin/hgTables You can read more about it here: http://genome.ucsc.edu/goldenPath/help/hgTablesHelp.html You can read more about the alignment trrack here: http://genomewiki.ucsc.edu/index.php/Mm9_multiple_alignment I hope this can get you the data you need. Please feel free to contact us again with further inquiries. Antonio Coelho UCSC Genome Bioinformatics Group Billis, Konstantinos wrote: > Dear Sir/Madam, > > I would like to ask about UCSC Genome Browser. As you can see in the > printscreen I have put in the > box a. a region of mouse genome that I would like to see. In addition, I can > see the conservation with other > species (box b). Thus, I was wondering if I can get the positions of those > conserved regions? I would like to > do that for many positions, so probably I was thinking to do that with SQL > query and perl DB module. > For example, where is the conserved region of chr7:81,403,428-81,403,497 > (mouse) in human genome? > Thanks in advance, > > > Best Regards, > Konstantinos Billis > > > ------------------------------------------------------------------------ > > _______________________________________________ > Genome maillist - [email protected] > https://lists.soe.ucsc.edu/mailman/listinfo/genome > _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
