Is there a particular reason why it is designed this way? To me, it seems that this trimming rule is not necessary. Does it give us a lot of benefit in certain important cases?
On Tue, May 25, 2010 at 6:31 PM, Mary Goldman <[email protected]> wrote: > Hi Peng, > > Blat is designed to split the name of query if it finds a bar "|" or a space > " " and the name is longer than 14 characters. If blat finds a space, it > takes the characters to the left of space; if blat finds a bar, it takes the > characters to the right of the bar. > > I hope this information is helpful. Please feel free to contact the mail > list again if you require further assistance. > > Best, > Mary > ------------------ > Mary Goldman > UCSC Bioinformatics Group > > On 5/25/10 2:34 PM, Peng Yu wrote: >> >> Hi, >> >> I try blat the following sequence. The name turns out to be >> '137307608' rather than 'uc009jzs.1|0|137307608'. Is it a bug in the >> genome browser? >> >> >>> >>> uc009jzs.1|0|137307608 >>> >> >> NNTCGAGAGGCTGGGTGAGATCCAAGTATTCCTCATTGGTTGTGAGAGTCAGAATTCGATNN >> >> >> > -- Regards, Peng _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
