Good Morning ZC: You can see the name equivalence in the ctgPos table. Try this mysql query to see these names and their positions:
mysql --user=genome --host=genome-mysql.cse.ucsc.edu -A \ -e "select * from ctgPos;" mm9 | grep _random In the genome browser, this is the "Map Contigs" track. Turn on that track to see these names in the genome browser. --Hiram zhuocheng Hou wrote: > Hi there, > > I compared the ucsc mouse build (mm9, NCBI37) and original NCBI37 which > dolwnload from GenBank. Original mouse build NCBI37 includes 52 NT_*** > contigs while ucsc mouse includes several chr*_random.fa file. These > chr*_random.fa files don't have NT_* name. Why is this different? How can we > map these ucsc annoated genes on random on NCBI37 build? > > Thanks, > ZC _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
