Hi UCSC help group, I'm trying to align the chicken, zebra finch and lizard genomes by multiz-tba, since all the possible pairwise alignments have been done by UCSC, I'm wondering which files I need to continue multiz alignment step, the chain file or the net file? Also, how could I converse chain/net files to MAF files as the multiz input?
Another minor question is there is zebra finch to chicken chain and net data from table browser, but I didn't see that on the ftp site, is it only possible to download these files from table browser? Any help would be appreciated! Best, Qu _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
