Hello again Dongwan Hong, Sorry for misunderstanding your initial request. Yes, we will add AK1 to the Personal Genome Variants track. Please be patient; it may be a few months before it's available on the public website.
Regards, ---------- Ann Zweig UCSC Genome Bioinformatics Group http://genome.ucsc.edu Dongwan Hong wrote, On 6/2/2010 9:37 PM: > Dear Ann Zweig, > > I really appreciate to your kind reply and to tell me your development > server. > > However, we want to show all SNPs of AK1 on the part of Personal Genome > Variants > > in "Variation and Repeats" group. > > Please let me know that it available to open UCSC genome browser. > > Thanks > > Best wishes, > Dongwan Hong > > > --- Original Message --- > *From : *"Ann Zweig"<[email protected]> > *To : *"Dongwan Hong"<[email protected]> > *Date : *2010/06/02 수요일 오전 6:43:57 > *Subject : *Re: For the option of genome variants in UCSC genome browser > > Hello Dongwan Hong, > > Thank you for your interest in seeing your SNP data in the UCSC > Genome Browser. > dbSNP has just recently formally released the v131 SNP database. We > have picked > it up and created the UCSC v131 SNP track for the latest human > assembly (hg19). > You can view it on our development server: > http://genome-test.cse.ucsc.edu/cgi-bin/hgGateway > Please note, however, that because genome-test is a development & > testing server, we can never guarantee the stability or accuracy of the > software and data on this machine. > > This annotation track is now undergoing our strict quality assurance > process and > should be available on the public website by mid-summer. > > In the future, please direct your questions to the genome mailing > list at > [email protected] -- our moderated forum for user questions and > discussion. > You will likely get a quicker response to your question. > > Regards, > > ---------- > Ann Zweig > UCSC Genome Bioinformatics Group > http://genome.ucsc.edu > > > > Dongwan Hong wrote, On 5/27/2010 7:40 PM: > > Dear UCSC colleague, > > > > I'm happy to introduce myself. My name is Dr. Dongwan Hong. > > > > I'm working as a director of bioinformatics team in GMI Medical > Research > > Center, Seoul > > > > National University. > > > > GMI(Genomic Medicine Institute) was founded in 1997 with mission of > > providing > > > > Asian whole genome sequences and supporting the development of > genomic > > technology > > > > for future personalized medicine. > > > > We published a paper, "A highly annotated whole-genome sequence of a > > Korean individual", > > > > NATURE 460, 2009 and We presented 3.45 million SNPs, including > 10,162 > > non-synonymous > > > > SNPs of Korean individual, known as AK1(Altaic Korean 1), and > 170,202 > > short indels in our > > > > paper. Our SNP data also have deposited in verion 131 on dbSNP in > NCBI. > > > > We are anxious to open AK1's SNP data in a section of "genome > variatns" > > of "Varation and > > > > Repeats" on UCSC genome browser. If I have to send our SNP data > to you > > or what I have to > > > > do something, please let me know. Thanks, > > > > Best wishes, > > > > Dongwan Hong. > > > > > _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
