Dear Terence, Unfortunately, the table browser doesn't support sequence extraction from BAM files. In the meantime, you can download the BAM files from http://genome.ucsc.edu/Neandertal/. To get alignments from a specific region you will need to use SAMtools with a region specifier. You can download SAMtools from http://samtools.sourceforge.net/. If you need help with SAMtools, please contact their mailing list: [email protected].
Please contact the mailing list if you have further questions. Vanessa Kirkup Swing UCSC Genome Bioinformatics Group ----- Original Message ----- From: "Terence Dante Capellini" <[email protected]> To: "genome" <[email protected]> Sent: Wednesday, June 2, 2010 4:58:41 PM GMT -08:00 US/Canada Pacific Subject: [Genome] Question about Neanderthal Seq data Hi, I was wondering if there is a way to download all of the neanderthal contigs for a given genomic region? I tried using the table browser but to no avail, Thanks, Terence _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
