Dear Claudio, Instead of pasting your IDs using the "paste list" button, click on the "create" button next to "filter:".
Then paste your IDs (deleting the "*" in the process) into the box on the same line as "name does match" which is at the very top of the page. Click on "submit" and then click on "get output". If you have further questions, please don't hesitate to contact the mailing list. Vanessa Kirkup Swing UCSC Genome Bioinformatics Group ----- Original Message ----- From: "Claudio Casola" <[email protected]> To: [email protected] Sent: Wednesday, June 2, 2010 2:35:22 PM GMT -08:00 US/Canada Pacific Subject: [Genome] Retrieving sequences Hello, I have a number of human gene IDs in the UCSC format that I pasted as a list in the Table Browser to retrieve the corresponding coding sequences. I found out that the output includes some extra sequences that are not included in my list. This is annoying for the subsequent steps, so I wonder is there is any way to restrict the output only to the sequences from the IDs I pasted. Here's my list: uc001bwo.1 uc001efe.1 uc001htm.1 uc001kfp.1 uc001mio.1 uc001oio.1 uc001tjr.2 uc001ziu.1 uc002flv.1 uc002ghb.1 uc002hzk.1 uc002kaj.1 uc002tzm.2 uc002ujd.2 uc002vsw.1 uc003gfo.1 uc003ixd.1 uc003sos.2 uc004bsm.2 uc010fyd.1 Thank you. Best regards, Claudio Casola -------------------------------------------- Claudio Casola, Ph.D. Postdoctoral fellow, Hahn Lab Department of Biology 1001 East Third Street Bloomington, IN 47405-3700 Indiana University Phone: 812-856-7016 Fax: 812-855-6705 [email protected] _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
