Hello Qianqian, You are correct: the data does have an off-by-one error. It is likely the error was present in the data we received and the error went unnoticed since the track was created. You can find this data (without the error) in the DGV Structural Var track (table name: dgv), which also contains more recent data from other sources. Thank you for bringing this to our attention, and sorry for the confusion. Please contact us again if you have further questions. Best Antonio Coelho UCSC Genome Bioinformatics Group
Qianqian Zhu wrote: > Hello, > > I have a question regarding the coordinates of Redon CNPs. I download the > Redon CNPs from Table Browser. The start coordinates from Table Browser > should be 0-based. However I found the coordinates I got from Table Browser > are exactly the same as the coordinates in HapMap ( > ftp://ftp.sanger.ac.uk/pub/cnv_project/cnv_data/NCBI36/Redon_CNVs.gff), > where the coordinates are 1-based. This doesn't look right, because the > start coordinates from the two format should be off by one. > > Thank you! > > Sincerely, > Qianqian > _______________________________________________ > Genome maillist - [email protected] > https://lists.soe.ucsc.edu/mailman/listinfo/genome > _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
