Hello Angela Re, Special files (not in the mySQL database) are available for per-base scores here: http://hgdownload.cse.ucsc.edu/goldenPath/hg19/phastCons46way/
Help: http://genome.ucsc.edu/goldenPath/help/phastCons.html Hopefully this is helpful! Jennifer --------------------------------- Jennifer Jackson UCSC Genome Informatics Group http://genome.ucsc.edu/ On 6/6/10 5:24 AM, Angela Re wrote: > > Dear UCSC group, > > I'm interested to obtain the conservation score at the nucleotide > level for multiple genomic regions. Thsu I selected the phastCons46way > table and intersected with my custom track and obtained the scores of > each nucleotide. > > How can I retrieve the same information at the nucleotide level by the > "Downloads" option on a genome-wide scale? As far as I know, I can > download only files that contain information referring to regions, not > single nucleotides (such as phyloP46wayAll.txt). > > Thank you of your kind attention. > Best regards, > Angela Re > > > > _______________________________________________ > Genome maillist - [email protected] > https://lists.soe.ucsc.edu/mailman/listinfo/genome _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
