That was helpful, thanks!
On Mon, Jun 07, 2010 at 03:56:07PM -0700, Jennifer Jackson wrote: > Hello Sigal, > > To configure the Browser display, open the browser and click on the > track name (these are all links) "UCSC Genes". The track controls > are at the very top of the page. The track controls vary between > different track types/sources. > > Using the mySQL tables, > > * non-coding genes will have knownGene.cdsStart = knownGene.cdsStop > > * the canonical transcript for a gene cluster is identified in the > table knownCanonical. All other transcripts assigned to a cluster > (aka gene) are considered splice varients. The table knownIsoforms > links transcripts into genes. > > Use the Table browser to navigate the tables, learn the schema, and > identify the linking keys between the tables. To do this, open the > Table browser and set to track=UCSC Genes. Next, with the default > table left as knownGene, click on the button "describe table > schema". Related tables are listed with linking keys noted. Clicking > on any of the tables in the list brings them up to the top where the > schema is defined and that table's links are displayed below. > > Hopefully this is helpful! > Jennifer > > --------------------------------- > Jennifer Jackson > UCSC Genome Informatics Group > http://genome.ucsc.edu/ > > On 6/4/10 4:14 PM, Sigal Blay wrote: > >On the UCSC genome browser it is possible to configure the genes track > >to include or exclude non-coding genes and to include or exclude splice > >variants. > > > >How do you determine this information from the UCSC database > >(which tables and which table fields)? > > > >Thanks! > >Sigal Blay > >_______________________________________________ > >Genome maillist - [email protected] > >https://lists.soe.ucsc.edu/mailman/listinfo/genome _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
