Hi Jennifer, Does that mean these genes are "non-'protein'-coding" but potentially still contain exons (e.g. uc001aaa.3)? Are these computationally predicted exons or are they based on human RNA's and spliced EST data in GenBank?
Thanks, Hk -----Original Message----- From: Jennifer Jackson [mailto:[email protected]] Sent: Friday, June 11, 2010 3:16 PM To: Kelkar, Hemant Cc: [email protected] Subject: Re: [Genome] UCSC hg19 KnownGenes file Hello Hk, The transcripts having knownGene.cdsStart == knownGene.cdsEnd are non-coding. This will be the method to detect non-coding genes for many of the tracks in the Gene and Gene Predictions track group (example: RefSeq Genes, "refGene.cdsStart == knownGene.cdsEnd" are non-coding). We hope this is helpful. Please contact the list again if you would like more help. Thank you, Jen --- UCSC Genome Browser Support Jennifer Jackson [email protected] [email protected] On 6/11/10 10:20 AM, Kelkar, Hemant wrote: > Dear UCSC Genome Team, > > In the current human known genes file (knownGene.txt for hg19) several > entries have the same number for Coding region start (cdsStart) and end > (cdsEnd) fields. Is there a simple explanation for this? > > Thanks, > > Hk > > _______________________________________________ > Genome maillist - [email protected] > https://lists.soe.ucsc.edu/mailman/listinfo/genome _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
