Hi,
I found about 3% of SNPs in hg19.snp131 table have exactly identical
annotations (chromosome, position, observed alleles, etc) except for different
rsIDs. An example is listed below. Is this a bug or a feature?
Thanks,
Ivan
mysql> select * from snp131 where chrom='chr1' and chromStart=12197 and
chromEnd=12198\G
*************************** 1. row ***************************
bin: 585
chrom: chr1
chromStart: 12197
chromEnd: 12198
name: rs3871692
score: 0
strand: -
refNCBI: G
refUCSC: G
observed: C/G
molType: genomic
class: single
valid: unknown
avHet: 0
avHetSE: 0
func: missense
locType: exact
weight: 3
*************************** 2. row ***************************
bin: 585
chrom: chr1
chromStart: 12197
chromEnd: 12198
name: rs62635282
score: 0
strand: +
refNCBI: G
refUCSC: G
observed: C/G
molType: genomic
class: single
valid: unknown
avHet: 0
avHetSE: 0
func: missense
locType: exact
weight: 3
2 rows in set (3.52 sec)
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