It isn't necessary to run parallel blat. Simply run thousands of copies of it at the same time on different parts of your target and query sequences.
--Hiram ----- Original Message ----- From: "Peng Yu" <[email protected]> To: [email protected] Sent: Monday, June 14, 2010 8:21:32 PM GMT -08:00 Tijuana / Baja California Subject: [Genome] parallel blat A simple google search and the search in the output of blat command help do not show up any information on if blat can be run using multiple CPUs. If it support multi-threading or parallelism, would you please let me know what option I should use? -- Regards, Peng _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
