Hi Angela, The mRNA sequence in the foldUtr3 and foldUtr5 tables maintain the same stranded-ness as the original mRNA, meaning that the sequence is reported in the direction of transcription. You should be able to match the sequence from the foldUtr5 or foldUtr3 table to the mRNA sequence reported on the details description page for any UCSC gene. If you believe you have found an exception, please let us know.
I hope this information is helpful. Please feel free to contact the mail list again if you require further assistance. Best, Mary ------------------ Mary Goldman UCSC Bioinformatics Group On 6/14/10 11:27 PM, Angela Re wrote: > Dear UCSC staff > > > > I would be thankful if you might kindly let me know whether the > foldUtr5 and foldUtr3 tables take into account the mRNA strand. > When I downloaded the corrisponding files I noticed that the forward > strand is always provided along with the folding, regardless of the > true mRNA strand. Might you confirm this? > > Yours sincerely, > Angela Re > > > > > > > > _______________________________________________ > Genome maillist - [email protected] > https://lists.soe.ucsc.edu/mailman/listinfo/genome > _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
