I am trying to compile blat from source (blatSrc34) under Ubuntu 9.10 to make a 64bit executable.
My MACHTYPE is set by default to x86_64-pc-linux-gnu I created the required directory in blatSrc/lib and ~/bin using 'x86_64-pc-linux-gnu' and compilation failed with two errors. After searching the mailing list, I manually changed MACHTYPE to x86_64: $ echo $MACHTYPE x86_64 but compilation still fails with the following errors: cc1: warnings being treated as errors common.c: In function ‘firstWordInFile’: common.c:1695: error: ignoring return value of ‘fgets’, declared with attribute warn_unused_result make[1]: *** [common.o] Error 1 make[1]: Leaving directory `/usr/local/src/blatSrc/lib' make: *** [all] Error 2 What should I do to make Blat compile? Thank you very much, Dario Boffelli _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
