Hey all, I found this bug in at least 58 of the genes of the kown_genes table for hg18, where a single exon is reported as 2 separated exons, with a 0 bases long intron in between. For example,
uc001gxp.2 chr1 + 200403801 200425104 200403801 200403801 23 200403801,200404372,200405064,200405531,200406935,200407291,200412799,200413270,200415861,200417408,200417639,200418878,200419134,200419317,200420432,200422011,200422283,200422753,200422758,200423019,200423213,200424577,200424981, 200404262,200404421,200405333,200405795,200407190,200407537,200413084,200413689,200416140,200417535,200417687,200418972,200419225,200419410,200420530,200422180,200422442,200422758,200422890,200423107,200423292,200424743,200425104, This gene has 23 reported exons, however, there is one starting at chr1:200422753-200422758 and the next one is reported at chr1:200422758-200422890 Attached I send you the list with all the ucsc gene names where I could find this behaviur happening at least once. I'm not confident the list is complete though. Hope I'm reporting this on the right place. Cheers, -- Ignasi Moran Castany PhD Student - Jorge Ferrer's lab IDIBAPS - Hospital Clínic de Barcelona http://betacellregulation.net
uc001agv.1 uc001aha.1 uc001cdn.1 uc001gxp.2 uc001iqc.1 uc001jbd.1 uc001jls.1 uc001koi.2 uc001ljy.1 uc001llh.1 uc001lsx.1 uc009ycy.1 uc001ngd.1 uc001odw.1 uc001pcp.1 uc001rkb.1 uc001sem.1 uc001stb.1 uc001syw.1 uc001vgd.1 uc010apu.1 uc010axl.1 uc002bwt.1 uc010btg.1 uc002edf.1 uc002edl.1 uc002gfs.1 uc002ial.1 uc002imy.1 uc002ior.1 uc002jym.1 uc010die.1 uc002kfv.1 uc002kyv.1 uc002mya.1 uc002myh.1 uc002myg.1 uc002nxj.1 uc002paj.1 uc002rbb.1 uc010fhj.1 uc010fhl.1 uc002yda.1 uc010gtn.1 uc003byf.1 uc003jbi.1 uc003nkp.1 uc003pnv.1 uc010kgf.1 uc003ssi.1 uc003uez.1 uc003xuq.1 uc010mac.1 uc010mad.1 uc003yde.2 uc003ydd.2 uc004ccl.2 uc004cqq.1
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