Hi, I run blat on my own machine to get the psl files. Then I convert the psl files to bed, then to bigBed, then show the bigBed file by custom track. But the mismatch and overhang region can not be shown. By "overhang region", I mean if there are some nucleotides at the ends that are not mappable, they are indicated by a bar at the end in the online version blat.
Is there way a way to visualize the mismatches and overhang ends in genome browsers? -- Regards, Peng _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
