The procedure is too large to do all in one step. The first step consolidates the 100s of thousands of files down to perhaps less than 100 files. Then those ~100 files are put together which is easy since they are already sorted.
If you do not need sorted psl output, then please do not use pslSort. --Hiram > I'm still confused. Why a temp file is created? What is the difference > between the temp files and the final result files? Is the final file > just a combination of the temp files? I don't pinpoint where on the > wiki page mentions the "2 stages". Would you please be a little bit > specific on which part you are referring to? _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
