Thanks for the detail Jen. I hope to get it officially and not get into the multi-step process!
Sumit -----Original Message----- From: Jennifer Jackson [mailto:[email protected]] Sent: Monday, July 12, 2010 10:31 PM To: Middha, Sumit Cc: [email protected] Subject: Re: [Genome] Zebrafish zv9 Hello Sumit, If/when the assembly is published at NCBI, the UCSC Browser team will make a prioritization decision. Please feel free to check back in for an update at that time or in a few months if you do not see it there by then. It is possible to create your own liftOver file, but this is a non-trivial, multi-stepped process complicated further by starting with a non-UCSC assembly. If you already host a mirror, this may be a bit less difficult, in particular if you compile your own binaries and incorporate your own assemblies already. If you are interested in pointers to the source code to do this, please let us know. Best regards, Jen UCSC Genome Browser Support On 7/12/10 12:58 PM, Middha, Sumit wrote: > Hi, > > I am curious to know if UCSC will be hosting the latest zv9 genome for zebrafish. I am interested in using the liftOver tool to convert zv8 coordinates to zv9. > http://genome.ucsc.edu/cgi-bin/hgGateway?hgsid=165015913&clade=vertebrat e&org=Zebrafish&db=0 > > 12-July release: http://www.sanger.ac.uk/Projects/D_rerio/ > > Current Sequencing Status > > 12-Jul-2010 Unfinished Finished Total > Danio rerio<ftp://ftp.sanger.ac.uk/pub/sequences/zebrafish/> 504,682,762 1,584,692,387 2,089,375,149 > > Thanks, > Sumit > > > _______________________________________________ > Genome maillist - [email protected] > https://lists.soe.ucsc.edu/mailman/listinfo/genome _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
