I am having a problem resolving discrepancies between chicken SNPs mapped by NCBI and their locations in the chicken UCSC browser. For example SNP rs14548959 map to the same chromosome by NCBI or when blatting the sequence to the UCSC browser, but their different by several million base pairs.
Also, there are discrepancies between BGI numbers at NCBi versus ones listed at UCSC (rs24649162) Are these differences arising from different versions of the genomic sequence and SNP list at UCSC and NCBI? Also, is it possible to get a mapping of rs numbers to the UCSC BGI number? Best regards, Carl Carl Schmidt Department of Animal & Food Sciences University of Delaware Newark, DE 19716 302-831-1334 [email protected] _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
