Hi Ioanna, I'm sorry but I couldn't find a track or table named refMrna for ce6, ce4 or ce2. Do you mean between mrna and refGene? If so, refGene contains protein-coding and non-protein-coding genes taken from the NCBI RNA reference sequences collection (RefSeq). The mrna track shows alignments between C. elegans mRNAs in GenBank and the genome. For more information, please see their respective track description pages at: (refGene) http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=ce6&g=refGene and (mrna) http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=ce6&g=mrna.
I hope this information is helpful. Please feel free to contact the mail list again if you require further assistance. Best, Mary ------------------ Mary Goldman UCSC Bioinformatics Group On 7/15/10 4:26 AM, Ioanna Kalvari wrote: > Dear Sirs, > > I am a postgraduate student at the University of Edinburgh, currently > doing my MSc project on de novo transcriptome assembly using short reads. I > would like to know if you can provide me with some information about the > differences between the datasets of mrna and refMrna for C.elegans. > > I thank you in advance. > > Kind regards, > > Ioanna Kalvari > _______________________________________________ > Genome maillist - [email protected] > https://lists.soe.ucsc.edu/mailman/listinfo/genome > _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
