Hi Mary, Thank you for your response. I am wondering however, if there is a way to do this in batch mode for a list of genomic coordinates? Thank you, Jennifer
-----Original Message----- From: Mary Goldman [mailto:[email protected]] Sent: Thursday, July 15, 2010 5:56 PM To: Barb, Jennifer (NIH/CIT) [E] Cc: [email protected] Subject: Re: [Genome] Fasta sequence from genomic coordinates Hi Jennifer, We recommend using the "DNA" button in the top blue bar when you are viewing your assembly of interest. This example link is for hg19, chr21:33,031,597-33,041,570: http://genome.ucsc.edu/cgi-bin/hgc?g=getDna&i=mixed&c=chr21&l=33031596&r=33041570&db=hg19. I hope this information is helpful. Please feel free to contact the mail list again if you require further assistance. Best, Mary ------------------ Mary Goldman UCSC Bioinformatics Group On 7/15/10 11:31 AM, Barb, Jennifer (NIH/CIT) [E] wrote: > Hello, > Does anyone know of a tool that will allow you to upload genomic coordinates > (ie. chrom, sequence start, sequence stop) and can get back the fasta dna > sequence of those coordinates?? > > Any information would be incredibly helpful. > Thank you, > Jennifer Barb > > ------------------------------------------------------------------------------ > Jennifer J. Barb, Ph.D. > Mathematical and Statistical Computing Lab > Division of Computational Biosciences, CIT/NIH > Bldg12A, Room 2001, Bethesda, MD 20892 > 301.435.9232, (fax) 301.480.0028 > [email protected] > ------------------------------------------------------------------------------- > > _______________________________________________ > Genome maillist - [email protected] > https://lists.soe.ucsc.edu/mailman/listinfo/genome > _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
