Hello Tiandao, Thank you for sending feedback. Two immediate problems are:
1) The dbDb.name value must equal the defaultDb.genome and genomeClade.genome value. This could be the root cause of the problem on the gateway page. 2) the htmlPath value should point directly at a .html file, not just a directory. This may come up as a problem after #1 is corrected. Also should be verified: 3) double check that you have a .2bit file at /gbdb/cmv/*.2bit named the same as the dbDb.name value like "name.2bit" and in the proper format. Use the utility faToTwoBit from the kent source tree to create the file if needed. http://genome.ucsc.edu/FAQ/FAQformat.html#format7 Thanks, Jen UCSC Genome Browser Support On 7/19/10 11:56 AM, Tiandao Li wrote: > Hi Jen, > > I followed this instruction, and the following is my dbDb input. > > INSERT INTO dbDb > (name, description, nibPath, organism, > defaultPos, active, orderKey, genome, scientificName, > htmlPath, hgNearOk, hgPbOk, sourceName) > VALUES > ("Mouse_NC_004065", "July 2010", "/gbdb/cmv", "Mouse_NC_004065", > "NC_004065:1-1000", 1, 11, "Mouse_NC_004065", "Mouse_NC_004065", > "/gbdb/cmv", 0, 0, "version 1"); > > I removed all my imports, and repeated all steps again, still had this > error. As I said in my last email, if I click "add custom tracks" > button, and choose genome database from there and click "genome browser" > button on the top blue bar, I can select any genomes without any errors. > > Regards, > > Tiandao > > > On Mon, Jul 19, 2010 at 1:45 PM, Jennifer Jackson <[email protected] > <mailto:[email protected]>> wrote: > > Hello Tiandao, > > This is the correct setup for these two tables. Another key table is > dbDb (see step #11): > > http://genomewiki.ucsc.edu/index.php/Building_a_new_genome_database > > If you are still having problems after following the instructions, > then it is hard to know the exact cause. Duplicating what you did > before for other successfully loaded assemblies is recommended. > > Regards, > > > Jen > UCSC Genome Browser Support > > On 7/17/10 11:45 AM, Tiandao Li wrote: > > Here is the sample of defaultDb and genomeClade input. > > INSERT INTO defaultDb (genome, name) VALUES ("CCMV_NC_003521", > "CCMV_NC_003521"); > INSERT INTO genomeClade (genome, clade, priority) VALUES > ("CCMV_NC_003521", "other", 7); > > > > On Fri, Jul 16, 2010 at 3:07 PM, Tiandao Li <[email protected] > <mailto:[email protected]> > <mailto:[email protected] <mailto:[email protected]>>> wrote: > > Yes. And so if I select Mammal again, it won't bring up > Human. This > is a human hg18 only genome browser. I checked dbDb, > defaultDb, and > genomeClade, no problem there for me. And I use the "add custom > tracks" button, and direct me to another upload track page, > I used > clade there to select different genomes, no problem there. > > > On Fri, Jul 16, 2010 at 2:53 PM, Jennifer Jackson > <[email protected] <mailto:[email protected]> > <mailto:[email protected] <mailto:[email protected]>>> wrote: > > Hi Tiandao, > > This could be a set-up problem in hgcentral if you > assigned one > of your loaded databases to the clade "Other". Were the > defaultDb and genomeClade tables modified as in step #12 > of this > help wiki? > > > http://genomewiki.ucsc.edu/index.php/Building_a_new_genome_database > > Thank you, > > > Jen > UCSC Genome Browser Support > > On 7/16/10 10:24 AM, Tiandao Li wrote: > > Hi Jen, > > Finally I imported all genomes and annotation files into > local genome > browser. However, when select Other (clade), the > page always > show the > error mesg. Would you please what caused this error, > and how > to fix it? > Thanks! > > > *Error(s):* > > * Error reading 5 bytes: Operation not permitted > > > On Thu, Jul 15, 2010 at 12:04 AM, Jennifer Jackson > <[email protected] <mailto:[email protected]> > <mailto:[email protected] <mailto:[email protected]>> > <mailto:[email protected] <mailto:[email protected]> > <mailto:[email protected] <mailto:[email protected]>>>> wrote: > > Hello Tiandao, > > Are you still having trouble with your mirror? I > am not > sure which > problems were sorted out already and which you would > still like help > with. > > For your track below, have you tried setting the > display > to "pack" > or "full" in the assembly browser display? To do > this, > use the pull > down menu under the track name. > > More display help: > > http://genome.ucsc.edu/goldenPath/help/hgTracksHelp.html#FineTuning > > File format help (including .wig): > http://genome.ucsc.edu/FAQ/FAQformat.html > > Regarding the trackDb table - this is required. > Lines in > the table > correspond to tracks in the assembly. > > > Hopefully this helps, > > Jen > UCSC Genome Browser Support > > On 7/14/10 9:29 AM, Tiandao Li wrote: > > Hi Jen, > > I figured out a way to import bed file into DB. > Please look at > the table > below. > > *Sample Rows * > > > > bin chrom chromStart chromEnd > name > score > strand > 585 NC_003521 6664 7191 RL10 > 1000 > + > 585 NC_003521 7202 7900 RL11 > 1000 > + > 585 NC_003521 7939 9021 RL12 > 1000 > + > 585 NC_003521 9123 10124 RL13 > 1000 > + > 585 NC_003521 9123 10124 RL13 > 1000 > + > 585 NC_003521 10256 10432 UL2 > 1000 > + > 585 NC_003521 10504 11097 UL4 > 1000 > + > 585 NC_003521 11469 11924 UL5 > 1000 > + > 585 NC_003521 12130 12981 UL6 > 1000 > + > 585 NC_003521 13052 13693 UL7 > 1000 > + > > > The problem is I can't show the name next to the > bar. Please help! > > On Wed, Jul 14, 2010 at 10:32 AM, Tiandao Li > <[email protected] <mailto:[email protected]> > <mailto:[email protected] <mailto:[email protected]>> > <mailto:[email protected] <mailto:[email protected]> > <mailto:[email protected] <mailto:[email protected]>>> > <mailto:[email protected] <mailto:[email protected]> > <mailto:[email protected] <mailto:[email protected]>> > <mailto:[email protected] <mailto:[email protected]> > <mailto:[email protected] <mailto:[email protected]>>>>> wrote: > > Hi Jen, > > I followed your advice, however, the > converted > wig file > contains no > annotated info, such as RL10 in the last > column. > > Regarding gc5Base generation in building new > genome, from > the help > manual, looks like it needs at least one > trackDb > to show the > genome. > Is there a way to check on the genome on > browser > without any > trackDb, anyway, there are 3 default > trackDbs > there, Base > Position, > Short Match, and Restr Enzymes. > > Thanks, > > Tiandao > > > On Tue, Jul 13, 2010 at 4:48 PM, > Jennifer Jackson > <[email protected] <mailto:[email protected]> > <mailto:[email protected] <mailto:[email protected]>> > <mailto:[email protected] <mailto:[email protected]> > <mailto:[email protected] <mailto:[email protected]>>> > <mailto:[email protected] <mailto:[email protected]> > <mailto:[email protected] <mailto:[email protected]>> > <mailto:[email protected] <mailto:[email protected]> > <mailto:[email protected] <mailto:[email protected]>>>>> wrote: > > Hello Tiandao, > > Try these two modifications: > 1) remove the track line from the file > 2) leave off all arguments to the sort > command (the > numerical > sort is not wanted) > > sort bedFile.bed | > bedItemOverlapCount [options] > <database> stdin > > A new assembly requires the six > files listed > in this > help document: > http://genomewiki.ucsc.edu/index.php/Minimal_Browser_Installation > > It would be OK to skip step #10 in > this help > document: > http://genomewiki.ucsc.edu/index.php/Building_a_new_genome_database > > Thanks, > > > Jen > UCSC Genome Browser Support > > On 7/13/10 12:19 PM, Tiandao Li wrote: > > Hi Jen, > > However, it still showed the > wrong mesg. > The file is tab > separated. > > $ more ccmv.bed > track color=125,0,0 > NC_003521 6664 7191 RL10 > NC_003521 7202 7900 RL11 > NC_003521 7939 9021 RL12 > NC_003521 9123 10124 RL13 > NC_003521 9123 10124 RL13 > NC_003521 10256 10432 UL2 > NC_003521 10504 11097 UL4 > NC_003521 11469 11924 UL5 > NC_003521 12130 12981 UL6 > NC_003521 13052 13693 UL7 > NC_003521 13799 14305 UL8 > > $ sort -k1,1 -k2,2n ccmv.bed | > /opt/kent/bedItemOverlapCount > ccmv stdin > Expecting 3 words line 12 of > stdin got 2 > > And would you explain why need to > generate gc5Base > data and > load table > during building custom geome db? > > Thanks, > > Tiandao > > On Tue, Jul 13, 2010 at 1:55 PM, > Jennifer Jackson > <[email protected] <mailto:[email protected]> > <mailto:[email protected] <mailto:[email protected]>> > <mailto:[email protected] <mailto:[email protected]> > <mailto:[email protected] <mailto:[email protected]>>> > <mailto:[email protected] <mailto:[email protected]> > <mailto:[email protected] <mailto:[email protected]>> > <mailto:[email protected] <mailto:[email protected]> > <mailto:[email protected] <mailto:[email protected]>>>> > <mailto:[email protected] <mailto:[email protected]> > <mailto:[email protected] <mailto:[email protected]>> > <mailto:[email protected] <mailto:[email protected]> > <mailto:[email protected] <mailto:[email protected]>>> > <mailto:[email protected] <mailto:[email protected]> > <mailto:[email protected] <mailto:[email protected]>> > <mailto:[email protected] <mailto:[email protected]> > <mailto:[email protected] <mailto:[email protected]>>>>>> wrote: > > Hello Tiandao, > > Use the database name that you > assigned to your > reference genome > when it was loaded. This is > the same > value as in > "hgcentral.dbDb.name <http://hgcentral.dbDb.name> > <http://hgcentral.dbDb.name> > <http://hgcentral.dbDb.name> > <http://hgcentral.dbDb.name> > <http://hgcentral.dbDb.name>". > > > Hopefully this helps, > > > Jen > UCSC Genome Browser Support > > On 7/13/10 8:33 AM, Tiandao > Li wrote: > > Hi Jen, > > I have no problem to > create and load > trackDb. I want > to use BED > for our > genome annotation. The > following > is my bed file. > > $ more ccmv.bed > track name=CMV color=125,0,0 > NC_003521 6664 > 7191 RL10 > NC_003521 7202 > 7900 RL11 > NC_003521 7939 > 9021 RL12 > NC_003521 9123 > 10124 RL13 > NC_003521 9123 > 10124 RL13 > NC_003521 10256 > 10432 UL2 > NC_003521 10504 > 11097 UL4 > NC_003521 11469 > 11924 UL5 > NC_003521 12130 > 12981 UL6 > NC_003521 13052 > 13693 UL7 > NC_003521 13799 > 14305 UL8 > NC_003521 14327 > 14860 UL9 > > > sort -k1,1 -k2,2n > bedFile.bed \ > | bedItemOverlapCount > [options] > <database> stdin \ > | wigEncode stdin > data.wig data.wib > > However, I didn't know which > database I > should input for > bedItemOverlapCount. Or any > alternative method > directly convert > bed to > wig, which I knew how to > upload. > > Thanks, > > Tiandao > > On Mon, Jul 12, 2010 at > 11:02 > PM, Jennifer > Jackson > <[email protected] <mailto:[email protected]> > <mailto:[email protected] <mailto:[email protected]>> > <mailto:[email protected] <mailto:[email protected]> > <mailto:[email protected] <mailto:[email protected]>>> > <mailto:[email protected] <mailto:[email protected]> > <mailto:[email protected] <mailto:[email protected]>> > <mailto:[email protected] <mailto:[email protected]> > <mailto:[email protected] <mailto:[email protected]>>>> > <mailto:[email protected] <mailto:[email protected]> > <mailto:[email protected] <mailto:[email protected]>> > <mailto:[email protected] <mailto:[email protected]> > <mailto:[email protected] <mailto:[email protected]>>> > <mailto:[email protected] <mailto:[email protected]> > <mailto:[email protected] <mailto:[email protected]>> > <mailto:[email protected] <mailto:[email protected]> > <mailto:[email protected] <mailto:[email protected]>>>>> > <mailto:[email protected] <mailto:[email protected]> > <mailto:[email protected] <mailto:[email protected]>> > <mailto:[email protected] <mailto:[email protected]> > <mailto:[email protected] <mailto:[email protected]>>> > <mailto:[email protected] <mailto:[email protected]> > <mailto:[email protected] <mailto:[email protected]>> > <mailto:[email protected] <mailto:[email protected]> > <mailto:[email protected] <mailto:[email protected]>>>> > <mailto:[email protected] <mailto:[email protected]> > <mailto:[email protected] <mailto:[email protected]>> > <mailto:[email protected] <mailto:[email protected]> > <mailto:[email protected] <mailto:[email protected]>>> > <mailto:[email protected] <mailto:[email protected]> > <mailto:[email protected] <mailto:[email protected]>> > <mailto:[email protected] <mailto:[email protected]> > <mailto:[email protected] <mailto:[email protected]>>>>>>> wrote: > > Hello Tiandao, > > The README file I > pointed > you to has the > instructions for > creating a > track. Did you have a > question about a > particular step? > > Or maybe the problem is > related to track > type? > The RefSeq Genes > track type is > "genePred". It > might be > good to > examine the > current > hg19 trackDb.ra file > in the > kent source > tree to > see how > RefSeq Genes > is set up there. > > Or maybe the problem is > understanding the > viewing options? A > PSL, > BED, and genePred > track type > all look a bit > similar in the > browser > display. Dense mode > will put > all data on the > same line. Both > pack > and full will > display one > line per > table/file > (where one line > usually represents the > alignment of a entire > sequence). To > see this, > open the RefSeq Gene > track > in the > browser and > switch between the > different display modes > using the > pull-down menu > under the > track name. > > Some display help: > http://genome.ucsc.edu/goldenPath/help/hgTracksHelp.html#FineTuning > > Hopefully this > helps, but if > not please > let us know. > > Best regards, > > Jen > UCSC Genome Browser > Support > > On 7/12/10 8:40 AM, > Tiandao > Li wrote: > > Hi, > > I searched through > genome and > genome-mirror > lists about > how to add > annotation info > (such as > CDS) to genome > database on local > mirror. Where > can I find actual > examples of > trackDb.ra to load > annotation info to > local mirror? > > Thanks, > > Tiandao > > On Tue, Jul 6, > 2010 at > 4:38 PM, > Jennifer Jackson > <[email protected] <mailto:[email protected]> > <mailto:[email protected] <mailto:[email protected]>> > <mailto:[email protected] <mailto:[email protected]> > <mailto:[email protected] <mailto:[email protected]>>> > <mailto:[email protected] <mailto:[email protected]> > <mailto:[email protected] <mailto:[email protected]>> > <mailto:[email protected] <mailto:[email protected]> > <mailto:[email protected] <mailto:[email protected]>>>> > <mailto:[email protected] <mailto:[email protected]> > <mailto:[email protected] <mailto:[email protected]>> > <mailto:[email protected] <mailto:[email protected]> > <mailto:[email protected] <mailto:[email protected]>>> > <mailto:[email protected] <mailto:[email protected]> > <mailto:[email protected] <mailto:[email protected]>> > <mailto:[email protected] <mailto:[email protected]> > <mailto:[email protected] <mailto:[email protected]>>>>> > <mailto:[email protected] <mailto:[email protected]> > <mailto:[email protected] <mailto:[email protected]>> > <mailto:[email protected] <mailto:[email protected]> > <mailto:[email protected] <mailto:[email protected]>>> > <mailto:[email protected] <mailto:[email protected]> > <mailto:[email protected] <mailto:[email protected]>> > <mailto:[email protected] <mailto:[email protected]> > <mailto:[email protected] <mailto:[email protected]>>>> > <mailto:[email protected] <mailto:[email protected]> > <mailto:[email protected] <mailto:[email protected]>> > <mailto:[email protected] <mailto:[email protected]> > <mailto:[email protected] <mailto:[email protected]>>> > <mailto:[email protected] <mailto:[email protected]> > <mailto:[email protected] <mailto:[email protected]>> > <mailto:[email protected] <mailto:[email protected]> > <mailto:[email protected] <mailto:[email protected]>>>>>> > <mailto:[email protected] <mailto:[email protected]> > <mailto:[email protected] <mailto:[email protected]>> > <mailto:[email protected] <mailto:[email protected]> > <mailto:[email protected] <mailto:[email protected]>>> > <mailto:[email protected] <mailto:[email protected]> > <mailto:[email protected] <mailto:[email protected]>> > <mailto:[email protected] <mailto:[email protected]> > <mailto:[email protected] <mailto:[email protected]>>>> > <mailto:[email protected] <mailto:[email protected]> > <mailto:[email protected] <mailto:[email protected]>> > <mailto:[email protected] <mailto:[email protected]> > <mailto:[email protected] <mailto:[email protected]>>> > <mailto:[email protected] <mailto:[email protected]> > <mailto:[email protected] <mailto:[email protected]>> > <mailto:[email protected] <mailto:[email protected]> > <mailto:[email protected] <mailto:[email protected]>>>>> > <mailto:[email protected] <mailto:[email protected]> > <mailto:[email protected] <mailto:[email protected]>> > <mailto:[email protected] <mailto:[email protected]> > <mailto:[email protected] <mailto:[email protected]>>> > <mailto:[email protected] <mailto:[email protected]> > <mailto:[email protected] <mailto:[email protected]>> > <mailto:[email protected] <mailto:[email protected]> > <mailto:[email protected] <mailto:[email protected]>>>> > <mailto:[email protected] <mailto:[email protected]> > <mailto:[email protected] <mailto:[email protected]>> > <mailto:[email protected] <mailto:[email protected]> > <mailto:[email protected] <mailto:[email protected]>>> > <mailto:[email protected] <mailto:[email protected]> > <mailto:[email protected] <mailto:[email protected]>> > <mailto:[email protected] <mailto:[email protected]> > <mailto:[email protected] <mailto:[email protected]>>>>>>>> wrote: > > Hi Tiandao, > > For genomes with > annotation, the > path > would be: > > 1) load the > reference genome > sequence as > you have done > previously > 2) layer in > annotation as tracks > mapped > to the > genome in #1 > > This README > in the > kent source > tree has > the details > for #2 > > kent/src/product/README.trackDb > > I hope this > pointer > is useful, but > please let us > know if you > need > more help. > > For next > time, it > would nice for > us if > you sent your > question > through one our > mailing lists. This > question would > be a good > fit for > the > [email protected] <mailto:[email protected]> > <mailto:[email protected] > <mailto:[email protected]>> > <mailto:[email protected] > <mailto:[email protected]> > <mailto:[email protected] > <mailto:[email protected]>>> > <mailto:[email protected] > <mailto:[email protected]> > <mailto:[email protected] > <mailto:[email protected]>> > <mailto:[email protected] > <mailto:[email protected]> > <mailto:[email protected] > <mailto:[email protected]>>>> > <mailto:[email protected] > <mailto:[email protected]> > <mailto:[email protected] > <mailto:[email protected]>> > <mailto:[email protected] > <mailto:[email protected]> > <mailto:[email protected] > <mailto:[email protected]>>> > <mailto:[email protected] > <mailto:[email protected]> > <mailto:[email protected] > <mailto:[email protected]>> > <mailto:[email protected] > <mailto:[email protected]> > <mailto:[email protected] > <mailto:[email protected]>>>>> > <mailto:[email protected] > <mailto:[email protected]> > <mailto:[email protected] > <mailto:[email protected]>> > <mailto:[email protected] > <mailto:[email protected]> > <mailto:[email protected] > <mailto:[email protected]>>> > <mailto:[email protected] > <mailto:[email protected]> > <mailto:[email protected] > <mailto:[email protected]>> > <mailto:[email protected] > <mailto:[email protected]> > <mailto:[email protected] > <mailto:[email protected]>>>> > <mailto:[email protected] > <mailto:[email protected]> > <mailto:[email protected] > <mailto:[email protected]>> > <mailto:[email protected] > <mailto:[email protected]> > <mailto:[email protected] > <mailto:[email protected]>>> > <mailto:[email protected] > <mailto:[email protected]> > <mailto:[email protected] > <mailto:[email protected]>> > <mailto:[email protected] > <mailto:[email protected]> > <mailto:[email protected] > <mailto:[email protected]>>>>>> > <mailto:[email protected] > <mailto:[email protected]> > <mailto:[email protected] > <mailto:[email protected]>> > <mailto:[email protected] > <mailto:[email protected]> > <mailto:[email protected] > <mailto:[email protected]>>> > <mailto:[email protected] > <mailto:[email protected]> > <mailto:[email protected] > <mailto:[email protected]>> > <mailto:[email protected] > <mailto:[email protected]> > <mailto:[email protected] > <mailto:[email protected]>>>> > <mailto:[email protected] > <mailto:[email protected]> > <mailto:[email protected] > <mailto:[email protected]>> > <mailto:[email protected] > <mailto:[email protected]> > <mailto:[email protected] > <mailto:[email protected]>>> > <mailto:[email protected] > <mailto:[email protected]> > <mailto:[email protected] > <mailto:[email protected]>> > <mailto:[email protected] > <mailto:[email protected]> > <mailto:[email protected] > <mailto:[email protected]>>>>> > <mailto:[email protected] > <mailto:[email protected]> > <mailto:[email protected] > <mailto:[email protected]>> > <mailto:[email protected] > <mailto:[email protected]> > <mailto:[email protected] > <mailto:[email protected]>>> > <mailto:[email protected] > <mailto:[email protected]> > <mailto:[email protected] > <mailto:[email protected]>> > <mailto:[email protected] > <mailto:[email protected]> > <mailto:[email protected] > <mailto:[email protected]>>>> > <mailto:[email protected] > <mailto:[email protected]> > <mailto:[email protected] > <mailto:[email protected]>> > <mailto:[email protected] > <mailto:[email protected]> > <mailto:[email protected] > <mailto:[email protected]>>> > <mailto:[email protected] > <mailto:[email protected]> > <mailto:[email protected] > <mailto:[email protected]>> > <mailto:[email protected] > <mailto:[email protected]> > <mailto:[email protected] > <mailto:[email protected]>>>>>>> > > list. Doing this > would help us > to get > you a speedy > answer > and also > help other users > that are > reviewing the > Q & A on the > public > posting. > If you need > private > (not posted) > communications, the > list > [email protected] <mailto:[email protected]> > <mailto:[email protected] <mailto:[email protected]>> > <mailto:[email protected] <mailto:[email protected]> > <mailto:[email protected] <mailto:[email protected]>>> > <mailto:[email protected] <mailto:[email protected]> > <mailto:[email protected] <mailto:[email protected]>> > <mailto:[email protected] <mailto:[email protected]> > <mailto:[email protected] <mailto:[email protected]>>>> > <mailto:[email protected] <mailto:[email protected]> > <mailto:[email protected] <mailto:[email protected]>> > <mailto:[email protected] <mailto:[email protected]> > <mailto:[email protected] <mailto:[email protected]>>> > <mailto:[email protected] <mailto:[email protected]> > <mailto:[email protected] <mailto:[email protected]>> > <mailto:[email protected] <mailto:[email protected]> > <mailto:[email protected] <mailto:[email protected]>>>>> > <mailto:[email protected] <mailto:[email protected]> > <mailto:[email protected] <mailto:[email protected]>> > <mailto:[email protected] <mailto:[email protected]> > <mailto:[email protected] <mailto:[email protected]>>> > <mailto:[email protected] <mailto:[email protected]> > <mailto:[email protected] <mailto:[email protected]>> > <mailto:[email protected] <mailto:[email protected]> > <mailto:[email protected] <mailto:[email protected]>>>> > <mailto:[email protected] <mailto:[email protected]> > <mailto:[email protected] <mailto:[email protected]>> > <mailto:[email protected] <mailto:[email protected]> > <mailto:[email protected] <mailto:[email protected]>>> > <mailto:[email protected] <mailto:[email protected]> > <mailto:[email protected] <mailto:[email protected]>> > <mailto:[email protected] <mailto:[email protected]> > <mailto:[email protected] > <mailto:[email protected]>>>>>> > <mailto:[email protected] <mailto:[email protected]> > <mailto:[email protected] <mailto:[email protected]>> > <mailto:[email protected] <mailto:[email protected]> > <mailto:[email protected] <mailto:[email protected]>>> > <mailto:[email protected] <mailto:[email protected]> > <mailto:[email protected] <mailto:[email protected]>> > <mailto:[email protected] <mailto:[email protected]> > <mailto:[email protected] <mailto:[email protected]>>>> > <mailto:[email protected] <mailto:[email protected]> > <mailto:[email protected] <mailto:[email protected]>> > <mailto:[email protected] <mailto:[email protected]> > <mailto:[email protected] <mailto:[email protected]>>> > <mailto:[email protected] <mailto:[email protected]> > <mailto:[email protected] <mailto:[email protected]>> > <mailto:[email protected] <mailto:[email protected]> > <mailto:[email protected] <mailto:[email protected]>>>>> > <mailto:[email protected] <mailto:[email protected]> > <mailto:[email protected] <mailto:[email protected]>> > <mailto:[email protected] <mailto:[email protected]> > <mailto:[email protected] <mailto:[email protected]>>> > <mailto:[email protected] <mailto:[email protected]> > <mailto:[email protected] <mailto:[email protected]>> > <mailto:[email protected] <mailto:[email protected]> > <mailto:[email protected] <mailto:[email protected]>>>> > <mailto:[email protected] <mailto:[email protected]> > <mailto:[email protected] <mailto:[email protected]>> > <mailto:[email protected] <mailto:[email protected]> > <mailto:[email protected] <mailto:[email protected]>>> > <mailto:[email protected] <mailto:[email protected]> > <mailto:[email protected] <mailto:[email protected]>> > <mailto:[email protected] <mailto:[email protected]> > <mailto:[email protected] > <mailto:[email protected]>>>>>>> would be an > > alternative > as it is > internal to the > UCSC Browser > team only. > > Best regards, > Jen > > UCSC Genome > Browser > Support > http://genome.ucsc.edu/contacts.html > [email protected] <mailto:[email protected]> > <mailto:[email protected] <mailto:[email protected]>> > <mailto:[email protected] <mailto:[email protected]> > <mailto:[email protected] <mailto:[email protected]>>> > <mailto:[email protected] <mailto:[email protected]> > <mailto:[email protected] <mailto:[email protected]>> > <mailto:[email protected] <mailto:[email protected]> > <mailto:[email protected] <mailto:[email protected]>>>> > <mailto:[email protected] <mailto:[email protected]> > <mailto:[email protected] <mailto:[email protected]>> > <mailto:[email protected] <mailto:[email protected]> > <mailto:[email protected] <mailto:[email protected]>>> > <mailto:[email protected] <mailto:[email protected]> > <mailto:[email protected] <mailto:[email protected]>> > <mailto:[email protected] <mailto:[email protected]> > <mailto:[email protected] <mailto:[email protected]>>>>> > <mailto:[email protected] <mailto:[email protected]> > <mailto:[email protected] <mailto:[email protected]>> > 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<mailto:[email protected] > <mailto:[email protected]>>>> > <mailto:[email protected] > <mailto:[email protected]> > <mailto:[email protected] > <mailto:[email protected]>> > <mailto:[email protected] > <mailto:[email protected]> > <mailto:[email protected] > <mailto:[email protected]>>> > <mailto:[email protected] > <mailto:[email protected]> > <mailto:[email protected] > <mailto:[email protected]>> > <mailto:[email protected] > <mailto:[email protected]> > <mailto:[email protected] > <mailto:[email protected]>>>>> > <mailto:[email protected] > <mailto:[email protected]> > <mailto:[email protected] > <mailto:[email protected]>> > <mailto:[email protected] > <mailto:[email protected]> > <mailto:[email protected] > <mailto:[email protected]>>> > <mailto:[email protected] > <mailto:[email protected]> > <mailto:[email protected] > <mailto:[email protected]>> > <mailto:[email protected] > <mailto:[email protected]> > <mailto:[email protected] > <mailto:[email protected]>>>> > <mailto:[email protected] > <mailto:[email protected]> > <mailto:[email protected] > <mailto:[email protected]>> > <mailto:[email protected] > <mailto:[email protected]> > <mailto:[email protected] > <mailto:[email protected]>>> > <mailto:[email protected] > <mailto:[email protected]> > <mailto:[email protected] > <mailto:[email protected]>> > <mailto:[email protected] > <mailto:[email protected]> > <mailto:[email protected] > <mailto:[email protected]>>>>>> > <mailto:[email protected] > <mailto:[email protected]> > <mailto:[email protected] > <mailto:[email protected]>> > <mailto:[email protected] > <mailto:[email protected]> > <mailto:[email protected] > <mailto:[email protected]>>> > <mailto:[email protected] > <mailto:[email protected]> > <mailto:[email protected] > <mailto:[email protected]>> > <mailto:[email protected] > <mailto:[email protected]> > <mailto:[email protected] > <mailto:[email protected]>>>> > <mailto:[email protected] > <mailto:[email protected]> > <mailto:[email protected] > <mailto:[email protected]>> > <mailto:[email protected] > <mailto:[email protected]> > <mailto:[email protected] > <mailto:[email protected]>>> > <mailto:[email protected] > <mailto:[email protected]> > <mailto:[email protected] > <mailto:[email protected]>> > <mailto:[email protected] > <mailto:[email protected]> > <mailto:[email protected] > <mailto:[email protected]>>>>> > <mailto:[email protected] > <mailto:[email protected]> > <mailto:[email protected] > <mailto:[email protected]>> > <mailto:[email protected] > <mailto:[email protected]> > <mailto:[email protected] > <mailto:[email protected]>>> > <mailto:[email protected] > <mailto:[email protected]> > <mailto:[email protected] > <mailto:[email protected]>> > <mailto:[email protected] > <mailto:[email protected]> > <mailto:[email protected] > <mailto:[email protected]>>>> > <mailto:[email protected] > <mailto:[email protected]> > <mailto:[email protected] > <mailto:[email protected]>> > <mailto:[email protected] > <mailto:[email protected]> > <mailto:[email protected] > <mailto:[email protected]>>> > <mailto:[email protected] > <mailto:[email protected]> > <mailto:[email protected] > <mailto:[email protected]>> > <mailto:[email protected] > <mailto:[email protected]> > <mailto:[email protected] > <mailto:[email protected]>>>>>>> > > > > On 7/6/10 > 1:00 PM, > Tiandao Li wrote: > > Hi Jen, > > We have > several > annotated > genomes of > viruses > download > from NCBI and > other DB > serves. > Now I want to > import them with > annotation into our > local genome > browser. Would you > please point me > to the > details > of how to > do it? I > import some > sequences without > annotation to our > browser > before. > > Thanks, > > Tiandao > > > > > > > > > > _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
