Hello Jagjit, We have checked, and we can access both our data, and the SAMtools website (samtools.sourceforge.net). You could also try http://picard.sourceforge.net/ for the PICARD tool to read the BAM files. You can actually use SAMtools to access our files without downloading the data by using the full ftp address as a filename when invoking it.
If you are having issues with the tools, you can search their sites for further information. The SAMtools help address is: [email protected] <mailto:[email protected]>. Best, Antonio Coelho UCSC Genome Bioinformatics Group jagjit singh wrote: > Dear Sir/Madam, > > I came across the following links while I was browsing for the neandertal's > nuclear sequences. But I could not open these links directly. I am also > facing a problem in downloading the recommended tool for it (SAMTOOL). Can > you please help me to open these links. > > ftp://hgdownload.cse.ucsc.edu/gbdb/hg18/neandertal/seqAlis/SLFeld1.hg18.bam > ftp://hgdownload.cse.ucsc.edu/gbdb/hg18/neandertal/seqAlis/SLFeld1.hg18.bam.bai > ftp://hgdownload.cse.ucsc.edu/gbdb/hg18/neandertal/seqAlis/SLMez1.hg18.bam > ftp://hgdownload.cse.ucsc.edu/gbdb/hg18/neandertal/seqAlis/SLMez1.hg18.bam.bai > ftp://hgdownload.cse.ucsc.edu/gbdb/hg18/neandertal/seqAlis/SLSid1253.hg18.bam > ftp://hgdownload.cse.ucsc.edu/gbdb/hg18/neandertal/seqAlis/SLSid1253.hg18.bam.bai > ftp://hgdownload.cse.ucsc.edu/gbdb/hg18/neandertal/seqAlis/SLVi33.16.hg18.bam > ftp://hgdownload.cse.ucsc.edu/gbdb/hg18/neandertal/seqAlis/SLVi33.16.hg18.bam.bai > ftp://hgdownload.cse.ucsc.edu/gbdb/hg18/neandertal/seqAlis/SLVi33.25.hg18.bam > ftp://hgdownload.cse.ucsc.edu/gbdb/hg18/neandertal/seqAlis/SLVi33.25.hg18.bam.bai > ftp://hgdownload.cse.ucsc.edu/gbdb/hg18/neandertal/seqAlis/SLVi33.26.hg18.bam > ftp://hgdownload.cse.ucsc.edu/gbdb/hg18/neandertal/seqAlis/SLVi33.26.hg18.bam.bai > > I'll appreciate your time and efforts in my favor and will be looking > forward for you reply. > > > Regards, > Jagjit > Dr Girish Shukla's lab > Dept BGES, Cleveland State University > Cleveland, Ohio-44115 > _______________________________________________ > Genome maillist - [email protected] > https://lists.soe.ucsc.edu/mailman/listinfo/genome > _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
