Hi Julie, This FAQ should be able to help you:
http://genome.ucsc.edu/FAQ/FAQdownloads.html#download32 I hope this information is helpful. Please feel free to contact the mail list again if you require further assistance. Best, Mary ------------------ Mary Goldman UCSC Bioinformatics Group On 7/28/10 6:28 AM, Julie Ahringer wrote: > I want to retrieve sequence corresponding to a set of regions defined > in a BED file. I tried to do this with the Table browser, but the > wrong sequence is returned. > > I chose Nematode, C. elegans, ce4, mapping and sequencing tracks, > assembly, gold > > This is the region I specified: > > chrX:7537739-8302438 > > This is what I got back: > > >> ce4_gold_U41624.1 range=chrX:7509358-7555104 5'pad=0 3'pad=0 >> strand=+ repeatMasking=none >> > Maybe this is the nearest gene? How can I get the exact sequence > specified. I found I can do this for a single region from a Get DNA > page, but I've got 3000 rows. > > Thanks, > > Julie > > _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
