Hi Nipun, You are correct, these datasets have not been created for hg19. They may be created in the future, but we cannot make any definitive comments about that yet.
Using the liftOver utility to map the data over may be of interest to you. The general idea would be to obtain the hg18 files, the file that maps genomes hg18 -> hg19, the compiled binary of liftOver, do the run, and load back as a Custom track or use the output as a flat file. You know where the hg18 files are, so obtaining them with anonymous ftp to the downloads server is the first step. Next, ftp the mapping file, named hg18ToHg19.over.chain.gz from here: http://hgdownload.cse.ucsc.edu/goldenPath/hg19/liftOver/ Then, ftp the compiled binary, called liftOver, for your OS from here: http://hgdownload.cse.ucsc.edu/admin/exe/ Type the liftOver command at the prompt for the usage. There are several options to consider. The best advice is to try a few runs (the process is quick) and evaluate the results to determine the optimal parameters for your purpose. Custom track help: http://genome.ucsc.edu/goldenPath/help/hgTracksHelp.html#CustomTracks Please feel free to contact the mailing list support team again if you would like more assistance. Warm regards, Jen UCSC Genome Browser Support On 7/28/10 2:47 PM, nipun kakkar wrote: > Hi All > > I was looking for corresponding hg19 files for the below mentioned hg18 > files. Can anyone point me to the same, as i was unable to find them. > > http://hgdownload.cse.ucsc.edu/goldenPath/hg18/database/wgRna.txt.gz > http://hgdownload.cse.ucsc.edu/goldenPath/hg18/database/rnaGene.txt.gz > > Could not find the hg19 variants of the above. > > Thanks, > Nipun > _______________________________________________ > Genome maillist - [email protected] > https://lists.soe.ucsc.edu/mailman/listinfo/genome _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
