Hello Thong, This is an area of active research with no data solutions in the UCSC browser.
Using the axtNet alignments would probably a poor choice as an input, since the alignments do not describe the ancestor state of the aligned alleles, an important component for this type of calculation. Our scientific developers suggest trying a google or pubmed search to see who is doing what then follow those leads. If you do ever create a track of this type of data with the reference genome as a scaffold, it could be loaded back as a custom track for visualization. http://genome.ucsc.edu/goldenPath/help/hgTracksHelp.html#CustomTracks Please feel free to contact the mailing list support team again. Warm regards, Jen UCSC Genome Browser Support On 8/1/10 2:32 PM, NGUYEN Trung Thong wrote: > Dear Sirs, > > I would like to get the human mutation rate and wonder if there are any ways > to to calculate human mutation rate from human-chimpanzee axtNet alignments? > > > Thanks a lot, > > Thong > _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
