Dear Vanessa, Thank you for your reply.
As scaffold1006 is coresponding to GL193131.1 in localID2acc<ftp://ftp.ncbi.nih.gov/genbank/genomes/Eukaryotes/vertebrates_mammals/Ailuropoda_melanoleuca/AilMel_1.0/Primary_Assembly/localID2acc>, and "scaffold1006 EP3 promoter 58200 58600 0.39661930963539976 . . ID=Promoter00191;" is in ftp://public.genomics.org.cn/BGI/panda/genome_annotation/regulatory/panda.scafSeq.gapFilled.noMito.fa.masked.ep3.promoter.join.gff.gz Could I think that is equal to GL193131.1 EP3 promoter 58200 58600 0.39661930963539976 . . ID=Promoter00191 for only the scaffold numbers changed but their sequences are equal. Is it all right? Best wishes, Zhidong 2010/8/5 Vanessa Kirkup Swing <vane...@soe.ucsc.edu> > Dear Zhidong, > > The data for this assembly was obtained from NCBI and we were able to > locate this page for you to use: > > > ftp://ftp.ncbi.nih.gov/genbank/genomes/Eukaryotes/vertebrates_mammals/Ailuropoda_melanoleuca/AilMel_1.0/Primary_Assembly/localID2acc > > Hope this helps! Please don't hesitate contacting the mailing list if you > have further questions. > > Vanessa Kirkup Swing > UCSC Genome Bioinformatics Group > > ----- Original Message ----- > From: "zhidong yuan" <zhidong.y...@gmail.com> > To: genome@lists.soe.ucsc.edu > Sent: Tuesday, August 3, 2010 7:36:05 AM GMT -08:00 US/Canada Pacific > Subject: [Genome] How could I map the annotation provided in panda database > to UCSC genome browser? > > Hi, could someone tell me how to find the corresponding scaffold in UCSC > Genome Browser to the one provided in the Giant Panda Database ( > http://panda.genomics.org.cn/page/panda/index.jsp)<http://panda.genomics.org.cn/page/panda/index.jsp%29>.? > For instance, > scaffold1020 corresponding which GL? in the UCSC Genome Browser? How could > I > map the gene annotation, regulate elements and ncRNA gene in panda database > to the UCSC Genome Browser for some they only provide genome coordinate? > > Thank you. > > -- > Zhidong > _______________________________________________ > Genome maillist - Genome@lists.soe.ucsc.edu > https://lists.soe.ucsc.edu/mailman/listinfo/genome > _______________________________________________ Genome maillist - Genome@lists.soe.ucsc.edu https://lists.soe.ucsc.edu/mailman/listinfo/genome
