Hi all, I tried to convert a bed file to bigbed, and visualized it on our local UCSC mirror, but unfortunately no matter how I change the setting, the track always stayed at pack. It seems that full or squish does not do anything with the track. Since the track and the file are in our local server, I can not post link here at the moment, but I will consider loading to external host if needed. The bigBedInfo command shows:
$ bigBedInfo adipose-uni.bowtie.bb version: 4 isCompressed: yes isSwapped: 0 itemCount: 19,132,866 primaryDataSize: 148,503,559 primaryIndexSize: 1,208,984 zoomLevels: 10 chromCount: 25 basesCovered: 49,603,138 meanDepth (of bases covered): 12.343004 minDepth: 1.000000 maxDepth: 183964.000000 std of depth: 257.659587 so I think there is nothing wrong with it. Do I have to do something else, or did I do something wrong? Thanks, D. _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
