Hi everyone,
I am trying to install UCSC Genome Browser on my local computer (Ubuntu
10.04)
I follow this instruction:
http://genome.ucsc.edu/admin/jk-install.htmluntil Step 7
and I get this error.
m...@minh-desktop:~$ echo $MACHTYPE
i686
m...@minh-desktop:~$ echo $MYSQLLIBS
/usr/lib/libmysqlclient.a -lz
m...@minh-desktop:~/Downloads/jksrc/src/hg$ echo $MYSQLINC
/usr/include/mysql
m...@minh-desktop:~$ cd kent/src/hg
bash: cd: kent/src/hg: No such file or directory
m...@minh-desktop:~$ cd '/home/minh/Downloads/jksrc/src/hg'
m...@minh-desktop:~/Downloads/jksrc/src/hg$ sudo make install
DESTDIR=/usr/lib CGI_BIN=/cgi-bin/ucsc
ERROR: missing MYSQLLIBS or MYSQLINC definitions in environment
these are typically,
for bash shell users:
$ export MYSQLLIBS="/usr/lib/mysql/libmysqlclient.a -lz"
$ export MYSQLINC=/usr/include/mysql
for csh/tcsh shell users:
% setenv MYSQLLIBS "/usr/lib/mysql/libmysqlclient.a -lz"
% setenv MYSQLINC /usr/include/mysql
See also: http://genome.ucsc.edu/admin/jk-install.html
make: *** [hgLib] Error 255
Why does it say MYSQLLIBS and MYSQLINC are missing? I do have them when I
echo them...
By the way, when the instruction says make install
DESTDIR=/destination/prefix CGI_BIN=/cgi-bin/path.
What does it mean "/destination/prefix"? My cgi-bin folder is in
/usr/lib/cgi-bin. Does it mean DESTDIR= /usr/lib and CGI_BIN = /cgi-bin??
Please help,
Thank you,
Minh.
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