Hi Leo, Please see this previously answered mailing list question: https://lists.soe.ucsc.edu/pipermail/genome/2009-October/020325.html
Please don't hesitate to contact the mail list again if you have any further questions. Katrina Learned UCSC Genome Bioinformatics Group Leo J. LEE wrote, On 08/27/10 14:01: > Hi, > > I plan to mine the splicing patterns contained in UCSC know genes > (they are actually transcripts) so I look into the clustering of them > done by UCSC. But I quickly get confused after checking some > examples. For example, cluster 2 (including transcripts uc009vis.2, > uc009viu.2, uc001aae.3, uc009vit.2, uc001aac.3, uc009viq.2, > uc009vir.2, uc001aab.3, uc001aah.3) and cluster 3 (including > transcripts uc009viw.2, uc009viv.2, uc009vix.2, uc009vjd.2, > uc009viy.2, uc009viz.2, uc009vjc.1, uc001aai.1, uc010nxs.1, > uc009vjb.1, uc009vje.2, uc009vjf.2) are on the same strand, overlap > significantly and even share some exons. How can they be divided into > two different clusters? Could somebody explain a bit more about the > UCSC clustering procedure or point me to the documentation for that? > Or any hints on mining splicing patterns based on UCSC genes will be > appreciated! Thanks a lot! > > -- Leo > _______________________________________________ > Genome maillist - [email protected] > https://lists.soe.ucsc.edu/mailman/listinfo/genome > _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
