Greetings I downloaded the rmsk file for mouse from the UCSC Genome Browser in BED format to check for repeats in RNA-seq data I have. One of the matches was LSU-rRNA_Hsa and I realized yesterday that Hsa probably means Homo sapiens. The track shows up in the browser for mm9, e.g., chr1:7765877-7765933, and I assume that the human sequence was used to search the mouse genome to generate the mask file. Is this a correct assumption?
Thanks Mike Michael Muratet, Ph.D. Senior Scientist HudsonAlpha Institute for Biotechnology [email protected] (256) 327-0473 (p) (256) 327-0966 (f) Room 4005 601 Genome Way Huntsville, Alabama 35806 _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
