Hello, This is Jing from USC, and currently I am trying to use the PhyloP conservation score data in UCSC genome browser. I am confused by the coordinates there. In table descriptions for both PhastCons and PhyloP, the starting positions are all mentioned as 0 based. However, in the PhastCons file format description, the starting positions are specifically pointed out at 1 based, while there is no such explanation for the PhyloP file. However, since the PhyloP file as stored in the same format as the PhastCons, I am not sure about the coordinates are 1 based or 0 based. Would you please give me some suggestions on this? Thank you very much for your help.
Best Regards, Jing -- Jing Zhang --------------------------------------------------------------- Electrical Engineering & Computational Molecular Biology University of Southern California Office: MCB 416D, (213) 821-4003, ____________________________________ Email: [email protected] _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
