Ann and Jen Thank you both for the information.
I was going to ask if you could provide the sequence data, but I take it from you're post that you probably don't actually have it? Do you happen to know if the sequence data is publically available anywhere? I can only find a small number of sequences in NCBI nucleotide and nothing in EMBL. The UCSC browser is about the only place I have found where you can get *any* mapping data for the WIBR-2 fosmid library so I really appreciate you making the effort to make that data available. If in future versions of the track you could also include the bacpac style clone id's e.g. WI2-1A1 style, that would be even better! Best regards, Andrew -----Original Message----- From: [email protected] [mailto:[email protected]] On Behalf Of Ann Zweig Sent: 01 September 2010 17:50 To: Andrew Craig Cc: genome Subject: Re: [Genome] hg19 fosmid end pairs Hello again, Andrew, Just a bit more information on this topic. When Jen said we didn't have plans to add it in the *near* future, she was correct. However, we do have plans to add it at some point. We are waiting for a collaborator to help us generate the tracks. As soon as that happens, we will make the track available on the hg19 browser. Regards, ---------- Ann Zweig UCSC Genome Bioinformatics Group http://genome.ucsc.edu On 08/31/10 13:29, Jennifer Jackson wrote: > Hello Andrew, > > We are very sorry, but there are no plans to add this dataset in the > near future. But, please feel free to check back in with our the mailing > list support team for an update later on. > > Warm regards, > > Jen > UCSC Genome Browser Support > > On 8/31/10 7:13 AM, Andrew Craig wrote: >> Dear List, >> >> The hg19 annotation database has a set of fosmid end pairs, i.e. >> http://hgdownload.cse.ucsc.edu/goldenPath/hg18/database/fosEndPairs.txt.gz >> >> I'm looking for fosmid end pair data for the hg19 assembly but there does >> not seem to be an equivalent file in >> http://hgdownload.cse.ucsc.edu/goldenPath/hg19/database/ >> >> Does this data set not exist for hg19, or is there somewhere else I should >> be looking? >> >> Best regards, >> >> Andrew Craig >> >> ----------------------------------------------------------------------------------------------------------------------------------------- >> This email is confidential and privileged. If you are not the intended >> recipient please accept our apologies; please do not disclose, copy, or >> distribute information in this email nor take any action in reliance on >> its contents: to do so is strictly prohibited and may be unlawful. >> Please inform us that this message has gone astray before deleting it. >> Thank you for your co-operation. >> ----------------------------------------------------------------------------------------------------------------------------------------- >> _______________________________________________ >> Genome maillist - [email protected] >> https://lists.soe.ucsc.edu/mailman/listinfo/genome > _______________________________________________ > Genome maillist - [email protected] > https://lists.soe.ucsc.edu/mailman/listinfo/genome _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome ----------------------------------------------------------------------------------------------------------------------------------------- This email is confidential and privileged. If you are not the intended recipient please accept our apologies; please do not disclose, copy, or distribute information in this email nor take any action in reliance on its contents: to do so is strictly prohibited and may be unlawful. Please inform us that this message has gone astray before deleting it. Thank you for your co-operation. ----------------------------------------------------------------------------------------------------------------------------------------- _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
