Dear Katja, We may have some tracks in the hg18 assembly with transcription factor binding site info that may help you:
https://lists.soe.ucsc.edu/pipermail/genome/2010-January/021060.html We also have a track on hg18 called TFBS Conservation which contains the location and score of transcription factor binding sites conserved in the human/mouse/rat alignment. http://genome.ucsc.edu/cgi-bin/hgTrackUi?c=chrX&g=tfbsConsSites If you have further questions, please don't hesitate to contact the mailing list again. Vanessa Kirkup Swing UCSC Genome Bioinformatics Group ----- Original Message ----- From: "Katja Schneider" <[email protected]> To: [email protected] Sent: Thursday, September 2, 2010 7:17:19 AM GMT -08:00 US/Canada Pacific Subject: [Genome] Non-conserved TFs between human and mouse Hi, I would like to make a list of human and mouse transcription factors and find out which TFs are not conserved between the two species. What is the best way to do this? _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
