Dear Sir, Madam, I am a bioinformatician working at INRA (french national institute for agriculture) in the animal genetics department for bovine genomes.
I am interested in finding some corresponding positions between UMD3 cow genome assembly and btau4 cow genome assembly. I have seen that a liftover file was available for that purpose: http://hgdownload.cse.ucsc.edu/goldenPath/bosTauMd3/liftOver/bosTauMd3ToBosTau4.over.chain.gz Could you please tell me if all positions can be matched between UMD3 and btau4? In other words, is it possible for me to match any positions from UMD3 to Btau4 using this file (inluding positions from UMD3 that are situated on unknown contigs to btau4)? Could you please also tell me how the liftover files were generated? Thank you very much in advance. Best regards, Sabrina. ******************************************* Sabrina Rodriguez Département de Génétique animale Unité GABI Domaine de Vilvert 78532 Jouy en josas +33 (0) 1 34 65 29 53 _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
