Hello Sylvia, There have been some new quality features added to the browser. It sounds as if you are running into one of them.
Data should fit within the reference genome bounds. The best recommendation is to correct the data so that it aligns within this range. Out-of-range data may be an indicator of another problem, but this is just side note we wanted to alert you to, as you will understand your data and source the best. We apologize for the inconvenience. If you are reloading the same custom track repeatedly, your team may find the Sessions tool helpful. Here is a link that explains how it works: http://genome.ucsc.edu/goldenPath/help/hgTracksHelp.html#Sessions Please feel free to contact the mailing list support team again if you would like more assistance. Warm regards, Jen UCSC Genome Browser Support On 9/7/10 12:11 PM, Sylvia Fischer wrote: > Hi, > > we are trying to add custom tracks in the genome browser, but keep > running into the following error message: > > Error File 'Lib14_smRNA.bedGraph.gz' - Error line 1129672 of > somefile.gz: chromEnd larger than chrom chrV size (20923131> 20919568) > > The odd thing is that exactly the same procedure with the exact same > data files did work 3 weeks ago. It does not appear that a different > version of the C. elegans genome assembly is used now as compared to > 3 weeks ago. > > Could you help us with this issue? > > Thanks, > > Sylvia Fischer > > > ------------------------------------------------------- > Sylvia E. J. Fischer, Ph. D. > > Department of Genetics, Harvard Medical School > Department of Molecular Biology, Massachusetts General Hospital > Richard B. Simches Research Building > 7th Floor, Room 7700 > 185 Cambridge Street, CPZN-7250 > Boston, MA 02114-2790 > e-mail: [email protected] > phone: 617 643 3319 > fax: 617 643 3050 > > _______________________________________________ > Genome maillist - [email protected] > https://lists.soe.ucsc.edu/mailman/listinfo/genome _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
