Hello Tony, Thank you for pointing out this discrepancy between our metadata and the actual file formats.
The data stored in our database for the Caltech signals are in wiggle format, but the source files on the download site are indeed in bedGraph format. We will update the metadata and the file names on the download site to reflect this fact. I hope this resolves your issue. If you have more questions, feel free to mail this list again. Brian On Thu, Sep 9, 2010 at 6:17 AM, <[email protected]> wrote: > Hi! > > It seems to me as if the schema information for the ENCODE Caltech > RNA-seq regulation track "Raw Signal" view is wrong. > For example, the schema information for K562 Paired 75nt Replicate 1 Raw > Signal states that the file > wgEncodeCaltechRnaSeqRawSignalRep1K562CellLongpolyaBb12x75.wig.gz is in > wiggle format (wig + wib). Though I can find the wib file when using ftp > to hgdownload.cse.ucsc.edu at /gbdb/hg18/wib, the > wgEncodeCaltechRnaSeqRawSignalRep1K562CellLongpolyaBb12x75.wig.gz > file > is unpacked to a bedGraph file and not a wig file. I cannot find the > wig file anywhere. > > I guess the bedGraph format is a better choice than wig/wib format > anyway, but I just wanted to ask if I am looking in the wrong place for > the .wig file. > > > Regards, > Tony Håndstad > > -- > > _______________________________________________ > Genome maillist - [email protected] > https://lists.soe.ucsc.edu/mailman/listinfo/genome > _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
