I realize that the coordinates presented in your internal annotation database dumps are zero-based half-open intervals. When submitting coordinates to LiftOver (specifically the web interface), is it expected that they also be zero-based, or should they be one-based? Are lifted coordinates returned as zero-based or one-based?
I have not been able to find this written anywhere; the FAQ entry about this (http://genome.ucsc.edu/FAQ/FAQtracks.html#tracks1) seems only to address the browser interface and the database files, not coordinates that are user-submitted. Is the only place at all that 1-based coordinates are used the Genome Browser interface display? Thanks for the help, Christopher Maier UNC Microbiology & Immunology _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
