Hi James, Unfortunately, this is not an option as the output from the Get DNA button is always formatted in FASTA format, which does not contain line numbers. More information about the FASTA format can be found here: http://en.wikipedia.org/wiki/FASTA_format.
I hope this information is helpful. Please feel free to contact the mail list again if you require further assistance. Best, Mary ------------------ Mary Goldman UCSC Bioinformatics Group On 9/10/10 4:26 PM, James Charles *Darwin* Widdoes wrote: > How do I display line numbers when displaying DNA sequences? > > For example, when I ask for the DNA sequences for chr1:10,001-20,000 I > receive > > >> hg19_dna range=chr1:10001-20000 5'pad=0 3'pad=0 strand=+ >> > repeatMasking=none > taaccctaaccctaaccctaaccctaaccctaaccctaaccctaacccta > accctaaccctaaccctaaccctaaccctaaccctaaccctaaccctaac > cctaacccaaccctaaccctaaccctaaccctaaccctaaccctaacccc > taaccctaaccctaaccctaaccctaacctaaccctaaccctaaccctaa > ccctaaccctaaccctaaccctaaccctaacccctaaccctaaccctaaa > ... > ... > ... > aggggcagtgggagggaactgagactggggagggacaaaggctgctctgt > > > I would like to get > > >> hg19_dna range=chr1:10001-20000 5'pad=0 3'pad=0 strand=+ >> > repeatMasking=none > 202 taaccctaaccctaaccctaaccctaaccctaaccctaaccctaacccta > 203 accctaaccctaaccctaaccctaaccctaaccctaaccctaaccctaac > 204 cctaacccaaccctaaccctaaccctaaccctaaccctaaccctaacccc > 205 taaccctaaccctaaccctaaccctaacctaaccctaaccctaaccctaa > 206 ccctaaccctaaccctaaccctaaccctaacccctaaccctaaccctaaa > ... > ... > ... > 401 aggggcagtgggagggaactgagactggggagggacaaaggctgctctgt > > Can you tell me how to get line numbers in the display? > > J Charles 'Darwin' Widdoes www.lava.net/~brainy www.eskimo.com/~brainy > > _______________________________________________ > Genome maillist - [email protected] > https://lists.soe.ucsc.edu/mailman/listinfo/genome > _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
