Hi Chris, Yes, the track is called "HGDP Allele Freq" and is available only in the Mar. 2006 (NCBI36/hg18) database, not yet the Feb. 2009 (GRCh37/hg19) database that is now the default for human. We used dbSNP build 129 coordinates to map the rs IDs to genomic locations in hg18. They still appear in details pages for hg18 build 130 SNPs when coordinates have not changed from snp129.
I'll consider this a request to remap the HGDP SNPs using hg19 snp131 coordinates. We have quite a backlog of hg18 tracks that need to be converted to hg19 coordinatesj, so I can't promise this will be done soon, but I will add it to the queue. Thank you for the suggestion! Angie ----- "Christopher Phillips" <[email protected]> wrote: > From: "Christopher Phillips" <[email protected]> > To: [email protected] > Sent: Monday, September 13, 2010 8:06:38 AM GMT -08:00 US/Canada Pacific > Subject: [Genome] Query about fate of 'Pickrell Maps' previously used to > summarize SNP global variability in UCSC browser > > This is a question relating to the appearance 18 months ago and > subsequent disappearance of "Pickrell Maps" used to summarize global > variability in SNPs characterised by Stanford for the CEPH diversity > panel samples. > > These maps were extremely useful when searching markers in dbSNP build > 129, but I note they are no longer available, or shown, for builds 130 > and 131. > > Thanks for your help, > > Chris Phillips > University of Santiago de Compostela, Spain > _______________________________________________ > Genome maillist - [email protected] > https://lists.soe.ucsc.edu/mailman/listinfo/genome _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
