Dear Balazs, To extract the chromosomal locations for your BAC clones you will want to use our Table Browser tool. To get there click on the the "Tables" link from the blue navigation bar.
1)Use the following settings below: clade: Mammal genome:Human assembly: hg19 group: Mapping and Sequencing Tracks track: bacEndPairs region: genome identifiers (names/accessions): Click on "paste list" and follow the instructions. *Note*: not all the identifiers that you paste in will be there. You will want to view the table schema. To do this click on "describe schema" next to table. In the row that says "name" click on "values" this will give you a list. output format: Selected fields from primary and related tables output file: fileName if you want to save it to your computer. 2)Click on "get output" 3)Select the field that you would like displayed in your output. 4)Click on "get output" Hope this helps. Please contact the mailing list again if you have further questions. Vanessa Kirkup Swing UCSC Genome Bioinformatics Group ----- Original Message ----- From: "Balazs Nemeti" <[email protected]> To: [email protected] Sent: Tuesday, September 14, 2010 7:37:11 AM GMT -08:00 US/Canada Pacific Subject: [Genome] BAC locations Dear Madam/Sir, I would like to kindly ask for the exact chromosomal locations of a few BAC clones whose identifiers are as follows: RP11-600E23 CTD-3066D20 CTD-3205P7 CTD-3013P20 RP11-458B19 CTD-3055P23 RP11-720A15 RP11-51K21 CTD-3203D24 RP11-47C11 Thank you very much for your efforts! Wishing the best, B. Nemeti _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
